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Define protein and peptide by uploading a PDB structure file and a sequence.
Structure file
If the PDB is a multi-model ensemble, specify the number of conformers
Please supply residues as comma-separated lists of residue numbers
Active residues (directly involved in the interaction)
You can specify a PDB file to use as reference in RMSD calculations
Reference RMSD PDB file
Peptide sequence
Perform grid-accelerated docking
Perform iATTRACT refinement after the docking
Calculate ligand RMSD after docking
Calculate interface RMSD after docking
Calculate fraction of native contacts after docking
Number of structures to collect as PDB file
Please supply a name for your docking run (one word)
Name of the docking run
Number of processor cores